Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| SKCM | rs11112641 | chr12:106051460 | T/C | 0 | 97 | 14.9 | 12 | 6.33 | KM Plot |
| SKCM | rs111295142 | chr2:65735999 | T/C | 5.12E-7 | 100 | 15.3 | 13.9 | 8.8 | KM Plot |
| SKCM | rs111352378 | chr5:577079 | G/A | 0 | 99 | 15.02 | 13.4 | 6.33 | KM Plot |
| SKCM | rs111379924 | chr2:65728593 | T/G | 5.12E-7 | 100 | 15.3 | 13.9 | 8.8 | KM Plot |
| SKCM | rs11170348 | chr12:53355588 | A/G | 4.59E-5 | 101 | 16.58 | 12.68 | 13 | KM Plot |
| SKCM | rs11174759 | chr12:63444363 | A/T | 1.82E-7 | 101 | 15.3 | 14.3 | 8.8 | KM Plot |
| SKCM | rs11239301 | chr10:45479714 | G/A | 1.97E-6 | 99 | 15.52 | 14.32 | 8.8 | KM Plot |
| SKCM | rs11239302 | chr10:45485952 | C/T | 1.13E-6 | 98 | 15.13 | 16.92 | 8.8 | KM Plot |
| SKCM | rs113070236 | chr15:41436875 | G/T | 9.61E-5 | 97 | 12.9 | 19.43 | 15.63 | KM Plot |
| SKCM | rs113644777 | chr13:50888164 | AT/A | 2.8E-5 | 101 | 15.47 | 12.6 | 9 | KM Plot |
| SKCM | rs115937176 | chr12:106055678 | T/A | 0 | 99 | 14.85 | 13.73 | 6.33 | KM Plot |
| SKCM | rs11606014 | chr11:64041817 | C/T | 1.33E-10 | 99 | 14.8 | 19.67 | 6.83 | KM Plot |
| SKCM | rs11665872 | chr19:56161898 | C/T | 4.48E-6 | 98 | 14.05 | 21.33 | 9 | KM Plot |
| SKCM | rs11666362 | chr19:56157358 | C/A | 3.49E-6 | 98 | 13.9 | 21.2 | 9 | KM Plot |
| SKCM | rs11710856 | chr3:35856288 | A/G | 2.96E-5 | 101 | 14.67 | 20.47 | 9.7 | KM Plot |